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Divisions of *Nephrology and ||Clinical and Metabolic Genetics,
Program in Developmental Biology,
Research Institute, and ¶Department of Paediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada;
Institute of Medical Sciences, and Departments of #Molecular and Medical Genetics, 
Laboratory Medicine and Pathobiology, and 
Medical Biophysics, University of Toronto, Toronto, Ontario, Canada; and **Ontario Cancer Institute, Toronto, Ontario, Canada.
Correspondence to Dr. Norman D. Rosenblum, Division of Nephrology, The Hospital for Sick Children, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada. Phone: 416-813-5667; Fax: 416-813-6271; E-mail: norman.rosenblum{at}sickkids.ca
| Abstract |
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| Introduction |
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BWS is associated with disruption of genomic imprinting of one or more genes in the 11p15.5 region. Genomic imprinting is a process that results in parent-of-origin-specific gene expression. Approximately 20% of sporadic BWS cases demonstrate mosaicism for paternal uniparental disomy (UPD), with two paternally derived copies of chromosome 11p15.5 and no maternal contribution for that region (5,6) (Figure 1). In approximately 50% of BWS cases, there is an epigenetic alteration at KvDMR1, which is a differentially methylated region at the 5'-end of an antisense transcript (KCNQ1OT1) that is not translated. In normal individuals, the KCNQ1OT1 transcript is imprinted with monoallelic expression from the paternally derived allele. The epigenetic alteration in 50% of BWS cases involves loss of maternal methylation at KvDMR1 and biallelic expression of the antisense transcript KCNQ1OT1. KvDMR1/KCNQ1OT1 has been proposed as an imprinting control center for the proximal cluster of imprinted genes in the 11p15.5 region. These genes include CDKN1C (also known as p57KIP2), KCNQ1 (KVLQT1), SLC22A1L, and TSSC3. CDKN1C, a maternally expressed gene encoding a cyclin-dependent kinase inhibitor, is a negative regulator of fetal growth. Mutations in this gene are detected in approximately 40% of familial BWS cases and approximately 5% of nonfamilial cases (5,7). A second, more telomeric, imprinted gene cluster on chromosome 11p15.5 includes insulin-like growth factor 2 (IGF2), which is a paternally expressed fetal growth factor, and H19, which is an untranslated RNA sequence. In 30% of BWS cases, biallelic expression of IGF2 occurs in the presence of normal H19 expression and promoter methylation (8,9). Rarely, a primary methylation change at the H19 promoter, affecting H19 expression, occurs. In these cases, loss of maternal monoallelic expression of H19 is associated with biallelic expression of IGF2.
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Studies in genetic murine models demonstrated that IGF2 and CDKN1C control growth and morphogenesis during kidney development (12,13). Although the renal phenotype in experimental murine models paralleling BWS gain-of-function IGF2 mutations demonstrated striking nephromegaly and general overgrowth (14), loss-of-function CDKN1C mutations produced cystic renal disease, as observed in BWS cases. Therefore, we hypothesized that CDKN1C is the gene responsible for the dysplastic/cystic renal disease component of BWS. We predicted that the highest rate of renal abnormalities would be observed in cases with CDKN1C downregulation, including (1) CDKN1C mutations, (2) loss of KvDMR1 methylation (which might downregulate CDKN1C expression), and (3) 11p15 UPD (which results in a decrease in CDKN1C expression and an increase in IGF2 expression) (Figure 3). Therefore, we analyzed the renal phenotypes in these molecular subgroups of BWS (n = 159), including 67 cases with renal abnormalities. Surprisingly, we observed that renal abnormalities were associated with paternal 11p15.5 UPD in BWS but not with CDKN1C mutations or KvDMR1 epigenetic lesions, suggesting that genes in the 11p15.5 region other than CDKN1C are responsible for the renal anomalies in BWS.
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| Materials and Methods |
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All patients monitored at HSC were offered abdominal computed tomographic or magnetic resonance imaging assessments at the age of 6 mo or at the time of diagnosis (if patients presented at >6 mo of age). All patients underwent abdominal ultrasonography every 3 mo until 8 yr of age. If patients with BWS presented at >8 yr of age, they underwent at least one ultrasonographic evaluation. Further imaging investigations, including renal scanning, voiding cystourethrography, and excretory urography, were performed if clinically indicated. For patients referred from institutions other than HSC, data from at least one ultrasonographic evaluation were available.
DNA or RNA was obtained for analyses of chromosome 11 UPD, CDKN1C mutations, and KvDMR1 methylation status. UPD testing results are reported for the 96 cases (48 from HSC and 48 from other centers) for which a recently developed, highly informative, sensitive test was applied (15). CDKN1C testing was performed for patients with a family history of BWS and/or clinical features suggesting a CDKN1C mutation (e.g., omphalocele or cleft palate) (16). Testing for KvDMR1 methylation status, with a relatively recently developed test, was performed for recently recruited patients. Of the 96 patients tested for UPD, 21 were tested for CDKN1C mutations and 34 were tested for KvDMR1 methylation status. All three tests were performed for 17 patients.
A subset of the patients described here were described elsewhere (15) in an analysis of tumor predisposition. These studies were approved by the Research Ethics Board of the HSC.
Cell Cultures
Lymphoblast lines were maintained in RPM1 1640 medium supplemented with 15% fetal calf serum. Fibroblast strains were maintained for <10 passages in
-minimal essential medium supplemented with 10% fetal calf serum.
Chromosome 11 UPD Analysis
Chromosome 11 UPD analysis was performed as described previously (15). Briefly, genomic DNA was extracted from either peripheral blood, cultured lymphoblasts, or skin fibroblasts from the probands and their parents. Quantitative multiplex-PCR, using highly polymorphic short tandem repeat (STR) markers, was performed with three markers within (TH, D11S2362, and D11S1997) and two markers distal to (D11S1998 and D11S1974) the BWS critical region at 11p15.5, to detect somatic cell rearrangements giving rise to paternal UPD of the chromosome 11p15.5 region. The percentage of paternal UPD of alleles at 11p15.5 in the probands was determined from informative alleles for at least two DNA markers within the BWS critical region that exhibited dosage increases of >20%, as determined with the following calculation: (peak area of paternal allele - peak area of maternal allele)/(peak area of paternal allele + peak area of maternal allele). Allele dosages were measured because mosaicism for 11p15.5 UPD exists among these patients.
Southern Blot Analysis of KvDMR1
For analysis of KvDMR1 methylation, genomic DNA was digested with EcoRI and NotI. Digestion products were subjected to electrophoresis on 0.8% agarose gels and were then transferred to GeneScreen Plus membranes (NEN, Boston, MA). Blots were hybridized with a 400-bp, [
-32P]dCTP-labeled, DMR probe (a kind gift from M. Higgins Roswell, Park Cancer Institute, Buffalo, NY) (17). The methylation index was determined by dividing the OD of the 4.2-kb band by the combined OD values of the 4.2- and 2.7-kb bands (17).
CDKN1C Mutation Screening
CDKN1C mutation screening was performed as described by Li et al. (16).
Statistical Analyses
Genotype-phenotype correlations between 11p15.5 UPD, CDKN1C mutations, KvDMR1 methylation, and renal abnormalities were assessed by using the
2 test. P values of <0.05 were considered statistically significant.
| Results |
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Genetic Abnormalities among Patients with BWS
Several regional or single-gene alterations have been demonstrated among patients with BWS (6). These abnormalities encompass regions of 11p15.5 that encode genes including IGF2 and CDKN1C. Because loss-of-function CDKN1C mutations in mice affect renal morphogenesis (12,13), we hypothesized that genotypic and epigenotypic abnormalities of the 11p15.5 region affecting CDKN1C might be associated with renal abnormalities. To investigate this possibility, we first identified imprinting abnormalities and CDKN1C mutations among patients for whom biologic samples were available. To determine whether the subsets of patients for whom genetic testing was performed were representative of the total population, we compared phenotypes between the groups. Our results demonstrated that the incidences of renal lesions, hemihyperplasia, and tumors were similar among patients who were tested for UPD and those who were not (tested for UPD versus not tested: renal lesions, P = 0.402; hemihyperplasia, P = 0.302; tumors, P = 0.735). Similarly, we could not detect differences in these abnormalities between individuals who were tested and those were not tested for mutations in CDKN1C (tested for CDKN1C versus not tested: renal lesions, P = 0.847; hemihyperplasia, P = 0.485; tumors, P = 0.805) or methylation at KvDMR1/KCNQ1OT1 (tested for methylation at KvDMR1/KCNQ1OT1 versus not tested: renal lesions, P = 0.260; hemihyperplasia, P = 0.902; tumors, P = 0.450). These data demonstrated that the subsets of patients with BWS who were tested for 11p15 UPD, methylation at KvDMR1, or CDKN1C mutations were representative of our BWS population.
Imprinting Abnormalities
We tested for imprinting abnormalities by determining the methylation status of KvDMR1 and the presence of paternal 11p15 UPD. Whereas only the paternal allele of KCNQ1OT1 is expressed in normal individuals, in association with methylation of the maternal KvDMR1 allele (Figure 1), there is biallelic expression of KCNQ1OT1 in approximately 50% of patients with BWS, in association with the loss of maternal methylation at KvDMR1. We tested 47 patients for methylation at the KvDMR1 locus and observed loss of maternal methylation in 21 of 47 non-UPD cases (45%), consistent with previous reports (Figure 2B). Paternal UPD at 11p15.5 is observed in approximately 20% of BWS cases (6). We tested 96 patients for 11p15.5 UPD, using quantitative multiplex-PCR of highly polymorphic STR markers within the BWS critical region. We detected UPD in 22 of 96 cases (23%), consistent with previous reports (Figure 2C).
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Genotype-Phenotype Correlations
Characterization of the clinical features and genetic/epigenetic abnormalities of a representative subset of patients with BWS provided the basis for determining whether downregulation of CDKN1C, via mutation or imprinting defects (such as 11p15.5 UPD or loss of methylation at KvDMR1), was positively associated with the occurrence of renal abnormalities (Table 2). Of interest, 11p15 UPD-positive patients demonstrated a significantly higher incidence of renal abnormalities (P = 0.0026). Patients with BWS and mosaicism for 11p15 UPD also demonstrated significantly higher incidences of hemihyperplasia and tumors, compared with 11p15 UPD-negative cases, as previously reported (5,10). To determine the contributions of hemihyperplasia and tumors to the new renal association demonstrated by our data, we performed a subgroup analysis of patients with renal lesions but without hemihyperplasia or tumors. For these patients, a positive statistical correlation was demonstrated between 11p15 UPD and renal lesions (P = 0.017 and P = 0.032, respectively). This positive correlation persisted when we controlled for the presence of nephromegaly (P = 0.003) or both nephromegaly and Wilms tumor (P = 0.003). Surprisingly, we could observe no statistically significant correlations between CDKN1C mutations and renal lesions or between hemihyperplasia and tumors, although there was a tendency toward lower incidences of these abnormalities among patients with CDKN1C mutations (Table 2). Similarly, we could not demonstrate significant correlations between the incidences of renal lesions, hemihyperplasia, or tumors (mostly Wilms tumors) and abnormal imprinting at the KvDMR1 locus (P = 0.181, P = 0.60, and P = 0.99, respectively).
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| Discussion |
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In BWS, paternal 11p15.5 UPD is observed in approximately 20% of cases and abnormal KvDMR1 methylation in approximately 50% of cases (57). Our findings of 23% of cases with paternal 11p15.5 UPD and 45% with abnormal KvDMR1 methylation are consistent with these results. Five percent of sporadic cases and 40% of familial cases have been reported to involve CDKN1C germline mutations (57). We observed CDKN1C mutations for eight of 32 patients (25%) who were tested. Three of the patients were from a single family, and five were from different families. The relatively high incidence is explained by the fact that a group of individuals with positive family histories was included in the study. Although not all of our patients underwent molecular testing, we determined that the incidences of renal lesions, hemihyperplasia, and tumors were similar for patients who were tested for UPD, CDKN1C mutations, and KvDMR1 methylation and those who were not tested.
Abnormalities of the renal collecting system that are associated with BWS include hydronephrosis and/or hydroureter, vesicoureteral reflux, double collecting system, and caliceal diverticula. These abnormalities have been observed in approximately 14% of BWS cases (2,3). Consistent with those reports, 17 of the patients (11%) in our study demonstrated such lesions. The most prevalent abnormality was hydronephrosis. Although determination of the underlying cause was limited by the retrospective nature of our study, imaging results for the patients with the most severe grades of hydronephrosis demonstrated the absence of any fixed obstructing lesion. Therefore, it is likely that, in most cases, dilation of the collecting system was secondary to nonobstructive abnormalities, perhaps including abnormalities of the pelvic and ureteric smooth muscle layers. Less common abnormalities of the collecting system included caliceal diverticula and vesicoureteral reflux. The similarity of the prevalence of those abnormalities to that observed in the general population (3) (2.5 and 1.2%, respectively) suggested that the presence of those lesions was coincidental and not secondary to BWS.
Cysts represented the most prevalent renal abnormality among our patients. The majority of the cysts were located in the medulla, rather than the cortex. This is in contrast to findings for patients without BWS, for whom isolated cysts are rare and are located in the cortex (21). Medullary cysts are derived from dilated collecting ducts and loops of Henle and are formed during development of the renal collecting system and medulla (22). Therefore, these cysts may represent a more severe phenotype in a continuum of collecting system abnormalities, with mild pelvic dilation representing a mild phenotype. The relatively high prevalences of nephrocalcinosis and nephrolithiasis in this study (4%) and other studies (3,4) might be secondary to the congenital abnormalities of the collecting system among the patients. Two of the six affected patients in our study exhibited medullary cysts associated with nephrocalcinosis, two exhibited hydronephrosis (which might predispose them to the development of renal stones), and two exhibited isolated nephrocalcinosis. Laboratory data (urinary calcium, creatinine, oxalate, amino acid, uric acid, and citrate levels) were available for four patients. Three of the patients demonstrated hypercalciuria, and results were normal for the fourth. Taken together, these abnormalities highlight the pathogenic role of collecting system maldevelopment in BWS and suggest the need for future studies aimed at defining the natural history of these abnormalities.
Our demonstration of a novel genotype-phenotype correlation between paternal 11p15.5 UPD and renal lesions suggests that this genomic region consists of genes that control renal morphogenesis. Disruption of the function of these genes might cause abnormal patterning of the collecting system in the cortex and medulla, leading to the development of renal cysts and collecting system abnormalities. The 11p15.5 region associated with BWS spans 1 Mb containing several imprinted genes, including IGF2, H19, CDKN1C, and KCNQ1/KCNQ1OT1 (Figure 1). Both CDKN1C and IGF2 were demonstrated to participate in the control of renal morphogenesis in animal studies; however, overexpression of IGF2 produces nephromegaly in mice but does not produce renal medullary dysplasia, as observed for some patients with BWS (14). In contrast, p57KIP2-(-/-) mice do exhibit such renal medullary dysplasia (12). Mutations in H19 cause enhanced expression of IGF2, and mice with mutations of both p57KIP2 and H19 exhibit elevated serum IGF-2 levels and more severe renal dysplasia, compared with p57KIP2-(-/-) mice (13). That is, increased IGF2 expression exacerbates the p57KIP2-(-/-) renal phenotype in mice but is not a primary cause of that phenotype. Our results demonstrating that CDKN1C mutations and imprinting defects at KvDMR1 were not correlated with renal abnormalities strongly suggest that defects in imprinted genes in the 11p15 region other than CDKN1C produce renal abnormalities among human subjects with BWS. Whereas both primary CDKN1C mutations and 11p15.5 UPD significantly reduced CDKN1C expression, an increase in renal malformations was noted only with 11p15.5 UPD (Figure 3, B versus C). Similarly to primary CDKN1C mutations, loss of methylation at KvDMR1 was not associated with renal malformations (Figure 3D). Therefore, imprinted genes or regulatory elements other than CDKN1C or KvDMR1 must account for renal dysplasia among human subjects with BWS. Future experiments directed at determining the role of imprinted genes in this region hold the promise of providing new insights into the genetic control of renal development and, more generally, the relationship between the control of growth and morphogenesis.
| Acknowledgments |
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| References |
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